JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51A7_chr11_4898783_4914462	0/0	t0006	1248	3	0	0	3	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0007	1248	3	0	0	3	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0008	1248	2	2	0	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0009	1249	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0010	1249	1	1	0	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0011	1249	1	0	0	0	1	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0012	1248	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0013	1248	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0014	1248	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0015	1248	1	0	0	0	1	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0016	1248	1	1	0	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0017	1248	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0018	1573	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51C1P_chr11_4685423_4702853	1/0	t0001	528	303	78	45	146	8	25	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/1	t0002	528	102	3	17	66	6	9	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	t0003	528	51	13	18	6	4	10	copy fasta	OR51C1P	chr11	4685423	4702853
OR51D1_chr11_4632477_4648060	0/0	t0001	2590	105	8	19	62	7	9	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0002	2588	86	13	5	54	2	12	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0003	2588	42	9	7	26	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0004	2589	32	4	6	19	1	2	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/1	t0005	2588	27	0	11	0	4	11	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0006	2588	25	22	3	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0007	2589	20	0	6	11	1	2	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0008	2591	16	0	2	10	1	3	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0009	2589	10	0	9	0	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0010	2588	9	8	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0011	2590	6	0	4	2	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0012	2589	5	5	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0013	2587	5	5	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0014	2589	5	0	0	5	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0015	2589	4	0	0	3	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0016	2590	4	0	0	4	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0017	2589	4	3	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	1/0	t0018	2587	4	3	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0019	2590	3	3	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0020	2590	3	3	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0021	2588	2	2	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0022	2589	2	0	2	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0023	2587	2	2	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0024	2588	2	0	0	2	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0025	2589	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0026	2589	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0027	2588	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0028	2588	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0029	2587	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0030	2590	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0031	2590	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0032	2589	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0033	2591	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0034	2589	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060