JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51D1_chr11_4632477_4648060	0/0	t0035	2590	1	0	0	0	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0036	2588	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0037	2588	1	0	0	0	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0038	2589	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0039	2588	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0040	2588	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0041	2590	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0042	2589	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0043	2588	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0044	2591	1	0	0	0	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0045	2588	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0046	2590	1	0	0	1	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	t0047	2588	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51E1_chr11_4638982_4660488	1/0	t0001	2094	123	27	6	72	2	15	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0002	2094	121	11	24	69	8	9	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/1	t0003	2094	70	14	20	13	4	18	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0004	2094	64	12	12	39	0	1	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0005	2094	16	0	12	0	1	3	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0006	2094	8	7	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0007	2094	6	6	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0008	2094	6	0	0	6	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0009	2094	5	0	0	5	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0010	2094	5	0	0	5	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0011	2094	4	0	0	4	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0012	2094	3	3	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0013	2094	2	0	1	0	1	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0014	2094	2	1	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0015	2094	2	2	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0016	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0017	2094	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0018	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0019	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0020	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0021	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0022	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0023	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0024	2094	1	0	1	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0025	2138	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0026	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0027	2094	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0028	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0029	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	t0030	2094	1	1	0	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E2_chr11_4675171_4702853	1/1	t0001	1830	337	60	64	153	17	41	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0002	1830	50	2	8	39	0	1	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0003	1830	19	9	1	9	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0004	1830	12	6	1	5	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0005	1830	7	7	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0006	1830	6	6	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0007	1830	4	0	0	3	0	1	copy fasta	OR51E2	chr11	4675171	4702853