JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51E2_chr11_4675171_4702853	0/0	t0008	1830	3	2	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0009	1830	3	0	0	3	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0010	1830	3	3	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0011	1830	3	0	0	0	1	2	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0012	1830	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0013	1830	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0014	1830	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0015	1830	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0016	1830	1	0	0	0	0	1	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0017	1830	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0018	1830	1	1	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0019	1830	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0020	1830	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0021	1830	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0022	1830	1	1	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0023	1830	1	1	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0024	1830	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0025	1830	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	t0026	1830	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51F2_chr11_4816321_4827456	1/1	t0001	144	405	93	78	174	14	44	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	t0002	144	1	1	0	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51G2_chr11_4907588_4924350	0/0	t0001	2381	121	22	24	60	4	11	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0002	2383	75	8	10	56	0	1	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0003	2382	55	0	0	52	1	2	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0004	2382	41	3	14	13	1	10	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0005	2383	38	14	0	17	0	7	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0006	2382	20	20	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/1	t0007	2382	18	2	8	0	5	2	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0008	2381	18	1	12	0	4	1	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0009	2382	9	0	5	0	1	3	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0010	2381	9	1	2	1	1	4	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0011	2383	7	3	0	4	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0012	2382	5	4	1	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0013	2380	4	2	2	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0014	2381	3	0	3	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0015	2382	3	3	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0016	2381	3	1	1	0	1	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0017	2382	2	0	2	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0018	2382	2	1	0	0	0	1	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0019	2383	2	0	0	2	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0020	2382	2	0	0	2	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0021	2381	2	2	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0022	2382	2	2	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0023	2382	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0024	2381	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0025	2382	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0026	2382	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0027	2381	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0028	2381	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0029	2383	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350