JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51G2_chr11_4907588_4924350	0/0	t0030	2381	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	1/0	t0031	2382	1	0	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0032	2382	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0033	2381	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0034	2383	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0035	2382	1	0	1	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0036	2382	1	0	1	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0037	2382	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0038	2382	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	t0039	2381	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51I2_chr11_5444323_5461518	1/0	t0001	2364	143	22	18	81	3	18	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0002	2369	140	9	24	82	7	18	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0003	2394	51	3	24	12	6	6	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0004	2390	44	1	6	34	0	3	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0005	2373	17	16	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0006	2362	9	0	0	9	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0007	2369	6	0	0	6	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0008	2389	6	6	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0009	2368	5	4	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0010	2392	4	4	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0011	2394	4	3	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0012	2392	3	2	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0013	2389	3	3	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0014	2366	3	0	0	3	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0015	2381	3	3	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0016	2394	3	3	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0017	2359	3	3	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0018	2389	3	3	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0019	2390	2	0	0	2	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0020	2365	2	2	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0021	2391	2	0	0	0	0	2	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0022	2365	2	1	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0023	2373	2	1	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0024	2406	2	2	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0025	2394	2	0	1	0	0	1	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0026	2369	1	0	0	0	0	1	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0027	2394	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0028	2390	1	0	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0029	2390	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0030	2392	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0031	2369	1	0	0	0	0	1	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0032	2392	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0033	2364	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0034	2367	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0035	2392	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0036	2364	1	0	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0037	2389	1	0	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0038	2366	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/1	t0039	2391	1	0	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0040	2391	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518