JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51I2_chr11_5444323_5461518	0/0	t0041	2364	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0042	2389	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	t0043	2373	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51L1_chr11_4989851_5010536	0/0	t0001	6353	75	1	10	59	0	5	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0002	6353	63	9	5	46	3	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	1/0	t0003	6353	58	11	22	22	1	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/1	t0004	6353	56	8	15	8	5	19	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0005	6355	47	18	12	7	2	8	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0006	6353	27	0	3	22	0	2	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0007	6355	22	0	0	17	2	3	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0008	6353	10	0	1	9	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0009	6350	9	9	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0010	6354	6	6	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0011	6353	6	6	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0012	6350	5	4	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0013	6353	5	0	5	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0014	6350	4	4	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0015	6355	4	0	0	0	1	3	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0016	6353	4	4	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0017	6353	3	2	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0018	6353	3	0	0	3	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0019	6353	3	0	1	0	1	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0020	6353	3	0	0	3	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0021	6353	3	0	0	3	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0022	6349	3	0	0	3	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0023	6355	2	2	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0024	6353	2	1	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0025	6353	2	0	0	2	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0026	6353	2	0	0	2	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0027	6353	2	2	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0028	6353	2	1	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0029	6353	2	0	0	2	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0030	6353	2	1	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0031	6353	2	2	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0032	6353	2	0	2	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0033	6353	2	0	2	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0034	6353	1	0	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0035	6355	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0036	6355	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0037	6355	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0038	6355	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0039	6352	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0040	6353	1	0	0	0	1	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0041	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0042	6353	1	0	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0043	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0044	6353	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0045	6353	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0046	6353	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0047	6353	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536