JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51L1_chr11_4989851_5010536	0/0	t0048	6352	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0049	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0050	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0051	6353	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0052	6353	1	0	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0053	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0054	6384	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0055	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0056	6353	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0057	6353	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0058	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0059	6353	1	0	1	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0060	6353	1	0	0	0	0	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0061	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	t0062	6353	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51M1_chr11_5378812_5398263	0/0	t0001	3109	75	17	25	24	3	6	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	1/0	t0002	3112	73	0	6	65	0	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0003	3105	62	16	10	23	0	13	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0004	3109	57	3	12	37	0	5	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0005	3112	49	4	11	23	4	7	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0006	3105	37	0	2	32	2	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/1	t0007	3105	28	13	8	0	2	4	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0008	3109	11	10	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0009	3112	6	5	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0010	3111	4	4	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0011	3105	4	4	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0012	3109	4	4	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0013	3111	3	3	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0014	3112	3	3	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0015	3109	3	0	3	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0016	3112	2	0	0	0	0	2	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0017	3105	2	2	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0018	3105	2	1	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0019	3105	2	0	0	0	0	2	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0020	3105	2	0	0	2	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0021	3112	2	0	0	2	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0022	3112	2	0	0	2	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0023	3109	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0024	3109	1	0	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0025	3105	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0026	3109	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0027	3105	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0028	3105	1	0	0	0	0	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0029	3105	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0030	3105	1	0	0	0	0	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0031	3112	1	0	0	0	0	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0032	3112	1	0	0	0	0	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0033	3112	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0034	3112	1	0	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0035	3112	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263