JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51M1_chr11_5378812_5398263	0/0	t0036	3098	1	0	0	0	1	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0037	3109	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0038	3112	1	0	0	0	0	1	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	t0039	3109	1	1	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51Q1_chr11_5417111_5428206	1/1	t0001	143	450	93	79	212	16	48	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	t0002	143	3	2	1	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	t0003	143	1	1	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR52A1_chr11_5141824_5159757	0/0	t0001	5230	119	20	26	52	7	14	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0002	5239	107	9	14	76	1	7	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0003	5237	41	8	17	5	4	7	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0004	5232	26	0	1	23	1	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	1/0	t0005	5240	16	11	2	0	0	2	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0006	5243	13	13	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/1	t0007	5241	12	0	2	6	1	2	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0008	5242	12	2	0	7	0	3	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0009	5241	7	6	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0010	5235	6	3	0	2	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0011	5237	4	0	4	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0012	5238	4	0	1	0	0	3	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0013	5241	3	3	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0014	5235	3	0	3	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0015	5237	3	2	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0016	5228	3	1	0	2	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0017	5237	3	3	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0018	5230	3	0	0	3	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0019	5239	2	2	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0020	5240	2	0	1	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0021	5240	2	2	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0022	5234	2	0	1	0	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0023	5231	2	0	0	2	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0024	5230	2	0	0	2	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0025	5232	2	0	0	2	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0026	5239	2	2	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0027	5242	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0028	5232	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0029	5237	1	0	0	0	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0030	5240	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0031	5239	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0032	5234	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0033	5235	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0034	5235	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0035	5235	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0036	5237	1	0	0	0	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0037	5237	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0038	5237	1	0	0	0	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0039	5237	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0040	5239	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0041	5239	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0042	5240	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0043	5239	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757