Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB11_chrX_15276697_15320640	0/0	t0006	1845	7	6	1	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0007	1844	5	0	0	5	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0008	1848	5	5	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0009	1850	5	5	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0010	1850	4	0	0	4	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0011	1846	3	3	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0012	1849	3	0	0	3	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0013	1849	2	1	1	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0014	1851	2	2	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0015	1844	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0016	1841	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0017	1845	1	0	1	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0018	1848	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0019	1843	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0020	1844	1	0	1	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0021	1848	1	0	0	0	0	1	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0022	1847	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0023	1844	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0024	1847	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0025	1849	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0026	1848	1	0	0	0	0	1	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0027	1844	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0028	1849	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0029	1849	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0030	1925	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB12_chrX_64219194_64235607	1/1	t0001	311	288	78	52	116	11	29	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	t0002	312	1	0	0	0	0	1	copy fasta	ASB12	chrX	64219194	64235607
ASB13_chr10_5633867_5671595	0/0	t0001	1946	114	34	7	60	4	9	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0002	1946	69	6	19	30	7	7	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0003	1946	59	2	18	23	3	13	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0004	1946	48	0	6	28	4	10	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0005	1946	19	0	1	18	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0006	1946	18	0	4	12	0	2	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0007	1946	17	0	12	4	0	1	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0008	1946	13	0	11	2	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0009	1946	13	11	2	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0010	1946	8	7	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0011	1946	6	0	0	6	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	1/0	t0012	1881	6	5	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0013	1946	5	0	0	5	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0014	1946	5	5	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0015	1946	5	5	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0016	1946	4	4	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/1	t0017	1946	4	0	3	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0018	1946	3	3	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0019	1946	3	3	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0020	1946	2	0	0	2	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0021	1946	2	0	0	2	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0022	1946	2	1	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0023	1881	2	2	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595