JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR52A1_chr11_5141824_5159757	0/0	t0044	5239	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0045	5239	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0046	5239	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0047	5239	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0048	5240	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0049	5230	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0050	5232	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0051	5231	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0052	5230	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0053	5230	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0054	5217	1	0	0	0	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0055	5239	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0056	5239	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0057	5232	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0058	5244	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0059	5230	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0060	5231	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0061	5230	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0062	5241	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	t0063	5237	1	0	0	0	0	1	copy fasta	OR52A1	chr11	5141824	5159757
OR52A5_chr11_5123776_5143356	1/0	t0001	3023	173	28	28	90	10	16	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/1	t0002	3023	105	1	15	82	0	6	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0003	3023	59	12	21	5	4	17	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0004	3023	15	14	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0005	3023	9	8	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0006	3023	8	7	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0007	3023	7	0	5	0	0	2	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0008	3023	5	5	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0009	3023	5	1	2	0	1	1	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0010	3023	4	4	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0011	3023	3	3	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0012	3023	3	3	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0013	3023	3	3	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0014	3023	3	0	0	3	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0015	3023	2	0	0	0	0	2	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0016	3023	2	1	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0017	3023	2	2	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0018	3023	1	0	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0019	3023	1	1	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0020	3023	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0021	3023	1	1	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0022	3023	1	1	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0023	3023	1	0	0	0	0	1	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0024	3023	1	0	0	0	0	1	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0025	3023	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0026	3023	1	0	0	0	1	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	t0027	3023	1	1	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52B4_chr11_4362263_4373386	1/1	t0001	180	327	77	51	158	7	32	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	t0002	180	103	18	30	32	7	16	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	t0003	180	35	0	1	34	0	0	copy fasta	OR52B4	chr11	4362263	4373386