JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR52B4_chr11_4362263_4373386	0/0	t0004	180	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52D1_chr11_5483685_5494749	0/1	t0001	109	423	82	77	203	14	46	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	1/0	t0002	109	47	12	7	25	2	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52E4_chr11_5875629_5892079	0/1	t0001	2010	131	33	25	55	3	14	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0002	2010	84	12	13	45	5	9	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0003	2008	81	9	15	51	0	6	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0004	2012	47	6	4	29	2	6	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0005	2002	15	14	1	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0006	2012	14	0	4	6	4	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0007	2010	14	0	0	14	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0008	2012	8	0	0	8	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0009	2008	7	1	0	6	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0010	2010	6	5	1	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0011	2008	5	4	1	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0012	2010	5	1	1	0	2	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0013	2010	4	4	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0014	2008	3	0	0	0	2	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0015	2010	3	1	2	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0016	2012	2	0	0	0	0	2	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0017	2010	1	1	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0018	2012	1	1	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0019	2010	1	0	0	0	0	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0020	2010	1	0	1	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0021	2012	1	0	0	1	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0022	2012	1	0	0	1	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0023	2008	1	0	0	0	0	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0024	2008	1	0	0	1	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	1/0	t0025	2009	1	0	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0026	2010	1	0	0	0	0	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	t0027	2010	1	0	0	1	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E5_chr11_5888208_5907730	0/1	t0001	1261	170	26	36	79	5	23	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0002	1262	106	18	17	52	7	12	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0003	1261	65	11	3	43	2	6	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0004	1261	63	10	10	39	2	2	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0005	1261	14	13	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0006	1261	10	9	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0007	1261	9	0	3	1	0	5	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0008	1261	9	4	4	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0009	1262	5	0	0	5	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0010	1262	3	0	0	3	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0011	1261	1	0	0	0	0	1	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0012	1236	1	0	0	0	0	1	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0013	1261	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0014	1261	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0015	1261	1	0	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0016	1262	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0017	1262	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	1/0	t0018	1261	1	0	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0019	1262	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	t0020	1261	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730