JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR52E6_chr11_5835928_5846897	1/1	t0001	29	450	90	78	218	16	46	copy fasta	OR52E6	chr11	5835928	5846897
OR52H1_chr11_5539561_5553540	0/0	t0001	122	239	39	28	141	2	29	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	1/1	t0002	120	176	52	54	43	10	15	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	t0003	121	8	7	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	t0004	121	4	1	1	0	2	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	t0005	120	1	1	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52I2_chr11_4576743_4598340	0/0	t0001	5617	108	1	16	76	6	9	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0002	5617	79	0	13	55	2	9	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0003	5617	60	6	9	33	4	8	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0004	5618	30	1	8	14	1	6	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0005	5617	16	15	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0006	5617	13	13	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0007	5612	10	8	2	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0008	5617	7	6	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0009	5617	7	0	5	0	1	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0010	5618	7	0	0	7	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0011	5617	5	5	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	1/0	t0012	5617	5	3	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0013	5617	5	5	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0014	5617	4	1	2	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0015	5614	4	4	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0016	5617	4	4	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0017	5617	4	1	0	0	0	3	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0018	5617	4	0	3	0	1	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0019	5617	3	3	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0020	5617	3	3	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0021	5617	3	3	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/1	t0022	5617	3	0	1	0	1	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0023	5617	3	2	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0024	5617	3	0	0	3	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0025	5617	2	2	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0026	5617	2	0	0	0	0	2	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0027	5617	2	0	0	0	0	2	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0028	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0029	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0030	5599	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0031	5617	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0032	5617	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0033	5617	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0034	5617	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0035	5617	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0036	5617	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0037	5617	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0038	5617	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0039	5617	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0040	5617	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0041	5617	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0042	5617	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0043	5617	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0044	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340