JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR52I2_chr11_4576743_4598340	0/0	t0045	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0046	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0047	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0048	5617	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0049	5612	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0050	5617	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0051	5618	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0052	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0053	5617	1	1	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0054	5618	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0055	5618	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0056	5618	1	0	1	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	t0057	5618	1	0	0	1	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52K1_chr11_4477646_4498497	1/0	t0001	4512	178	15	50	81	14	17	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/1	t0002	4509	75	7	10	38	2	17	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0003	4512	19	13	0	4	0	2	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0004	4509	18	0	0	18	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0005	4511	14	13	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0006	4513	12	0	0	10	0	2	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0007	4512	7	6	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0008	4509	5	5	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0009	4512	5	0	0	5	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0010	4511	4	4	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0011	4512	4	0	0	4	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0012	4512	4	4	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0013	4509	3	0	0	3	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0014	4512	3	2	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0015	4511	3	3	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0016	4511	3	0	0	3	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0017	4509	2	0	0	2	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0018	4509	2	0	0	2	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0019	4509	2	2	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0020	4512	2	0	0	2	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0021	4511	2	2	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0022	4511	2	2	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0023	4512	2	0	2	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0024	4511	2	0	0	2	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0025	4511	2	2	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0026	4509	1	0	0	0	1	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0027	4509	1	0	0	0	1	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0028	4509	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0029	4509	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0030	4509	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0031	4511	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0032	4511	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0033	4511	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0034	4509	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0035	4512	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0036	4512	1	0	0	0	0	1	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0037	4511	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497