JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR52K1_chr11_4477646_4498497	0/0	t0038	4512	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0039	4512	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0040	4512	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0041	4512	1	0	0	0	0	1	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0042	4512	1	0	0	0	0	1	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0043	4512	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0044	4511	1	0	0	0	0	1	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0045	4512	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0046	4512	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0047	4511	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0048	4512	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0049	4512	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0050	4512	1	0	0	0	0	1	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0051	4512	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0052	4511	1	1	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0053	4512	1	0	0	0	0	1	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	t0054	4512	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K2_chr11_4444295_4455361	1/1	t0001	123	473	96	84	225	18	48	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	t0002	123	4	4	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	t0003	123	1	0	0	1	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52L1_chr11_5980892_5991985	1/1	t0001	105	438	88	76	208	16	48	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	t0002	105	5	4	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	t0003	105	2	0	0	0	2	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	t0004	105	1	0	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52N1_chr11_5781471_5796265	0/1	t0001	1579	244	24	40	134	13	32	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0002	1583	59	17	7	27	3	5	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	1/0	t0003	1583	41	10	9	20	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0004	1577	19	15	4	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0005	1579	12	12	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0006	1579	11	0	9	0	0	2	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0007	1579	9	0	0	9	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0008	1577	5	3	2	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0009	1579	4	4	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0010	1578	4	3	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0011	1577	3	3	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0012	1579	1	1	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0013	1579	1	0	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0014	1579	1	0	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0015	1583	1	0	0	1	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0016	1577	1	1	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0017	1577	1	1	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	t0018	1583	1	0	0	1	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N2_chr11_5803924_5826483	0/1	t0001	368	166	40	28	62	12	23	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0002	368	68	14	10	32	4	8	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0003	368	67	4	12	42	2	7	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	1/0	t0004	368	44	12	8	22	0	1	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0005	367	19	0	0	19	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0006	368	14	9	4	0	0	1	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0007	366	11	10	1	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0008	368	6	4	2	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483