JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR52N2_chr11_5803924_5826483	0/0	t0009	368	2	0	0	0	0	2	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0010	368	1	0	0	1	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0011	368	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0012	367	1	0	0	1	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0013	368	1	0	1	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	t0014	368	1	0	0	1	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N4_chr11_5749243_5760958	0/0	t0001	364	298	42	53	155	14	34	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/1	t0002	364	93	19	16	44	2	11	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	1/0	t0003	364	54	15	14	23	0	1	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0004	364	17	16	1	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0005	361	5	0	0	5	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0006	375	1	1	0	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0007	364	1	0	0	1	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0008	364	1	1	0	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0009	364	1	0	0	1	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	t0010	361	1	0	0	1	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N5_chr11_5771165_5788355	0/1	t0001	1804	150	19	35	63	8	24	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0002	1804	60	4	11	35	2	8	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	1/0	t0003	1804	54	15	12	20	3	3	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0004	1804	8	7	1	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0005	1799	7	7	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0006	1805	6	0	2	0	3	1	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0007	1804	6	1	4	0	0	1	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0008	1804	6	6	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0009	1804	5	5	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0010	1804	5	5	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0011	1804	5	3	2	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0012	1804	4	0	0	4	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0013	1804	4	0	0	4	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0014	1804	3	3	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0015	1804	2	0	1	0	0	1	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0016	1804	2	0	0	2	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0017	1804	2	2	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0018	1804	2	2	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0019	1804	1	0	0	1	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0020	1804	1	0	1	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0021	1804	1	0	1	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0022	1804	1	1	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0023	1804	1	0	0	1	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0024	1804	1	0	0	1	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	t0025	1804	1	0	0	1	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR56A1_chr11_6014336_6035758	0/0	t0001	7504	97	4	14	69	1	9	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0002	7504	42	5	14	13	6	4	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0003	7504	39	1	2	34	0	2	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/1	t0004	7504	25	1	18	1	0	4	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0005	7504	14	1	5	1	2	5	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0006	7504	13	1	4	7	0	1	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0007	7504	12	1	3	8	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	1/0	t0008	7504	11	1	2	6	1	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0009	7504	8	0	7	0	1	0	copy fasta	OR56A1	chr11	6014336	6035758