JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR56A1_chr11_6014336_6035758	0/0	t0060	7504	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0061	7504	1	0	0	0	0	1	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0062	7504	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0063	7504	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0064	7504	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0065	7504	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0066	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0067	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0068	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0069	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0070	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0071	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0072	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0073	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0074	7504	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0075	7494	1	0	0	0	1	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0076	7504	1	0	0	0	0	1	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0077	7504	1	0	0	0	1	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0078	7504	1	0	0	0	0	1	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0079	7504	1	0	0	0	0	1	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0080	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0081	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0082	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0083	7504	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0084	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0085	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0086	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0087	7504	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	t0088	7504	1	1	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A3_chr11_5937251_5956347	0/1	t0001	3491	290	54	57	141	8	29	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0002	3491	108	14	20	58	7	9	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0003	3490	36	4	3	25	2	2	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0004	3491	8	8	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0005	3491	4	0	0	4	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0006	3491	3	3	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0007	3491	2	1	1	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0008	3491	1	0	0	0	0	1	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0009	3491	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0010	3491	1	0	1	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0011	3491	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0012	3491	1	0	0	0	0	1	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0013	3491	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0014	3491	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0015	3491	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0016	3491	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0017	3491	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0018	3491	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0019	3491	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0020	3491	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0021	3491	1	0	0	0	0	1	copy fasta	OR56A3	chr11	5937251	5956347