JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR56A3_chr11_5937251_5956347	0/0	t0022	3490	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	1/0	t0023	3491	1	0	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0024	3491	1	0	0	0	1	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0025	3491	1	0	0	0	0	1	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	t0026	3491	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A4_chr11_5994445_6011946	1/0	t0001	2827	179	13	31	111	10	13	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/1	t0002	2827	113	8	16	67	1	20	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0003	2827	26	1	3	17	1	4	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0004	2827	22	2	13	1	3	3	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0005	2827	17	17	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0006	2826	17	0	9	8	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0007	2827	11	6	2	2	1	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0008	2827	10	9	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0009	2827	10	0	0	10	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0010	2827	9	8	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0011	2827	9	9	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0012	2827	9	9	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0013	2827	5	0	3	0	1	1	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0014	2827	3	3	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0015	2827	3	0	0	0	1	2	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0016	2827	2	2	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0017	2827	2	0	0	0	0	2	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0018	2827	2	2	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0019	2827	1	1	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0020	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0021	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0022	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0023	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0024	2827	1	0	0	0	0	1	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0025	2827	1	1	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0026	2827	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0027	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0028	2826	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0029	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0030	2827	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0031	2776	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0032	2827	1	0	0	0	0	1	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0033	2827	1	0	0	0	0	1	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0034	2827	1	1	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0035	2827	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0036	2827	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0037	2827	1	1	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0038	2827	1	1	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	t0039	2827	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56B1_chr11_5731448_5743523	0/1	t0001	1103	135	30	20	58	9	17	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0002	1103	86	5	20	43	7	11	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0003	1102	51	7	12	24	0	8	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0004	1102	48	1	7	39	0	1	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0005	1103	42	3	4	34	0	1	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0006	1103	41	15	4	14	2	6	copy fasta	OR56B1	chr11	5731448	5743523