JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR56B1_chr11_5731448_5743523	0/0	t0007	1103	10	9	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0008	1103	9	7	1	0	0	1	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0009	1102	9	3	3	0	0	3	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0010	1103	4	4	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0011	1103	2	2	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	1/0	t0012	1102	2	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0013	1102	2	2	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0014	1103	2	1	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0015	1103	1	0	0	1	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0016	1103	1	0	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0017	1103	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0018	1088	1	0	0	1	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0019	1103	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0020	1102	1	0	0	1	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	t0021	1103	1	0	0	1	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B2P_chr11_5756153_5774080	0/0	t0001	3118	138	19	28	64	8	19	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0002	87	59	17	9	24	3	6	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0003	3118	56	0	2	45	2	7	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0004	3118	48	2	5	33	2	6	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	1/0	t0005	3118	37	7	9	20	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0006	3118	25	5	6	10	0	4	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0007	3118	9	9	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0008	3118	8	0	7	0	1	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0009	3118	8	7	1	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0010	3116	7	2	4	0	0	1	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0011	3118	5	5	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0012	3117	5	5	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0013	3118	4	2	2	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0014	3116	4	4	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0015	3118	2	2	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0016	3118	2	0	0	2	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0017	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0018	3118	1	1	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0019	3118	1	0	0	0	0	1	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0020	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0021	3118	1	1	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0022	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0023	3118	1	0	1	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0024	3118	1	0	1	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0025	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0026	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0027	3118	1	1	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0028	3118	1	0	1	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0029	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0030	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0031	3118	1	0	0	1	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	t0032	3118	1	1	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/1	t0033	3118	1	0	0	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B4_chr11_6102684_6113835	1/1	t0001	193	383	90	76	163	10	42	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	t0002	193	1	0	0	1	0	0	copy fasta	OR56B4	chr11	6102684	6113835