Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB13_chr10_5633867_5671595	0/0	t0024	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0025	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0026	1946	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0027	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0028	1946	1	0	0	0	0	1	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0029	1946	1	0	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0030	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0031	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0032	1946	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0033	1946	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0034	1946	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0035	1946	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0036	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0037	1946	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0038	1946	1	0	0	0	0	1	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0039	1946	1	0	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0040	1881	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0041	1946	1	0	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	t0042	1946	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB14_chr3_57263342_57297685	0/0	t0001	1424	219	22	48	101	11	37	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/1	t0002	1429	42	19	15	0	1	6	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0003	1429	39	37	2	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	1/0	t0004	1424	12	5	1	0	0	5	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0005	1424	7	1	6	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0006	1429	6	5	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0007	1429	4	2	2	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0008	1429	2	0	0	0	2	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0009	1424	1	0	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0010	1424	1	0	0	1	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0011	1424	1	0	0	1	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0012	1424	1	0	0	1	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	t0013	1429	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB15_chr7_123596821_123644481	0/0	t0001	2838	93	29	10	44	4	6	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	1/0	t0002	2839	79	17	18	30	3	10	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0003	2860	29	8	7	9	0	5	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0004	2859	28	8	4	10	2	4	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0005	2862	15	3	3	5	0	4	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0006	2863	14	1	5	7	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/1	t0007	2864	11	0	0	9	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0008	2843	11	0	1	10	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0009	2865	10	0	0	7	0	3	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0010	2861	10	2	3	2	1	2	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0011	2858	10	2	3	3	1	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0012	2866	6	0	1	5	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0013	2840	6	0	1	3	0	2	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0014	2854	5	0	0	5	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0015	2841	5	4	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0016	2839	4	0	0	4	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0017	2839	4	0	2	0	2	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0018	2839	3	0	2	0	1	0	copy fasta	ASB15	chr7	123596821	123644481