JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5A1_chr11_59431469_59456380	0/0	t0001	7664	134	15	27	72	9	11	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0002	7667	40	4	12	17	2	5	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0003	7665	23	0	10	11	0	2	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	1/0	t0004	7665	23	20	2	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0005	7664	23	1	6	11	2	3	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0006	7666	14	1	0	12	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0007	7666	11	6	0	5	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0008	7664	10	0	2	6	0	2	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0009	7664	6	0	1	5	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0010	7664	6	0	0	6	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0011	7665	5	4	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0012	7663	5	0	2	3	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0013	7665	5	5	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0014	7664	4	0	0	4	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0015	7664	4	0	1	0	0	3	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0016	7664	4	0	0	4	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0017	7664	4	4	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0018	7665	4	4	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0019	7665	4	2	2	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0020	7664	4	0	0	4	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0021	7664	3	0	0	3	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0022	7664	3	0	0	3	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0023	7667	3	2	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0024	7664	3	3	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0025	7664	3	0	0	0	0	3	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0026	7665	2	2	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0027	7665	2	0	1	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0028	7665	2	2	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0029	7664	2	0	0	2	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0030	7666	2	0	0	2	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/1	t0031	7664	2	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0032	7664	2	0	1	0	1	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0033	7666	2	1	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0034	7665	2	2	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0035	7664	2	2	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0036	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0037	7667	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0038	7666	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0039	7665	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0040	7664	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0041	7664	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0042	7665	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0043	7665	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0044	7665	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0045	7665	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0046	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0047	7664	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0048	7664	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0049	7666	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0050	7664	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380