JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5A1_chr11_59431469_59456380	0/0	t0051	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0052	7664	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0053	7664	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0054	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0055	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0056	7664	1	0	0	0	1	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0057	7473	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0058	7664	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0059	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0060	7664	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0061	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0062	7664	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0063	7664	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0064	7663	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0065	7663	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0066	7665	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0067	7664	1	0	0	0	1	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0068	7667	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0069	7664	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0070	7666	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0071	7665	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0072	7665	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0073	7664	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0074	7666	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	t0075	7663	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A2_chr11_59411969_59431413	0/1	t0001	5346	181	26	36	89	6	23	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0002	5346	49	5	11	25	2	6	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0003	5345	18	0	3	12	0	3	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0004	5345	17	2	12	3	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0005	5345	15	15	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0006	5346	13	1	1	10	0	1	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0007	5346	13	1	0	12	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0008	5346	10	0	2	7	0	1	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0009	5346	10	6	1	3	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0010	5346	10	4	0	6	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0011	5346	9	4	5	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0012	5346	8	0	0	8	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	1/0	t0013	5345	6	4	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0014	5346	5	5	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0015	5346	3	0	1	0	1	1	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0016	5346	3	2	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0017	5346	3	0	0	3	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0018	5346	3	0	0	3	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0019	5345	2	2	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0020	5346	2	2	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0021	5346	2	0	0	0	0	2	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0022	5346	2	0	2	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0023	5346	2	0	2	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0024	5346	2	0	2	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0025	5346	2	2	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413