JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5A2_chr11_59411969_59431413	0/0	t0026	5346	2	0	0	0	0	2	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0027	5346	2	2	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0028	5345	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0029	5345	1	0	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0030	5345	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0031	5345	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0032	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0033	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0034	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0035	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0036	5346	1	0	0	0	0	1	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0037	5346	1	0	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0038	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0039	5346	1	0	0	0	1	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0040	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0041	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0042	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0043	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0044	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0045	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0046	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0047	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0048	5346	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0049	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0050	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0051	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0052	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	t0053	5346	1	1	0	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5AN1_chr11_59353895_59376714	0/1	t0001	6713	162	21	44	68	8	20	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0002	6712	42	3	9	25	1	4	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	1/0	t0003	6712	39	16	3	17	0	2	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0004	6713	18	0	1	17	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0005	6710	6	0	0	6	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0006	6713	6	6	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0007	6712	4	4	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0008	6709	4	0	2	0	1	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0009	6713	4	0	0	4	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0010	6713	4	0	0	0	0	4	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0011	6713	3	0	0	1	0	2	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0012	6712	3	3	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0013	6713	3	3	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0014	6713	3	3	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0015	6713	3	2	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0016	6713	3	2	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0017	6711	2	0	0	2	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0018	6712	2	0	0	2	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0019	6712	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0020	6712	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0021	6712	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0022	6712	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714