JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5AN1_chr11_59353895_59376714	0/0	t0023	6712	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0024	6713	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0025	6713	2	0	0	1	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0026	6713	2	0	2	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0027	6713	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0028	6713	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0029	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0030	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0031	6712	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0032	6712	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0033	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0034	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0035	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0036	6712	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0037	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0038	6712	1	0	0	0	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0039	6713	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0040	6713	1	0	0	0	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0041	6713	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0042	6713	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0043	6713	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0044	6713	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0045	6713	1	0	0	0	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0046	6713	1	0	0	0	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0047	6713	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0048	6713	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0049	6710	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0050	6713	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0051	6712	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0052	6713	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0053	6713	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0054	6713	1	0	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0055	6713	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0056	6712	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	t0057	6712	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AS1_chr11_56022654_56043191	0/0	t0001	6885	105	4	20	67	5	9	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0002	6885	62	1	10	37	4	10	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0003	6885	47	2	5	32	1	7	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/1	t0004	6885	34	5	4	22	0	2	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0005	6886	21	1	1	16	0	3	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0006	6885	20	13	5	0	1	1	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0007	6884	10	0	0	10	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0008	6885	9	8	1	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0009	6885	8	8	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0010	6885	6	5	1	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0011	6886	6	0	3	0	3	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0012	6886	5	1	2	0	2	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0013	6885	5	5	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0014	6885	5	0	3	0	1	1	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0015	6885	5	4	1	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191