JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5AS1_chr11_56022654_56043191	0/0	t0066	6885	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0067	6885	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	t0068	6885	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AU1_chr14_21149865_21161063	0/1	t0001	264	224	16	42	116	15	34	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	1/0	t0002	264	190	41	30	106	2	10	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0003	264	19	9	4	4	1	1	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0004	264	9	9	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0005	264	7	7	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0006	264	6	6	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0007	264	6	5	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0008	264	5	0	2	2	0	1	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0009	264	2	2	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0010	264	1	0	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	t0011	264	1	1	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5B12_chr11_58433994_58447236	1/1	t0001	424	411	91	72	188	16	42	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	t0002	424	2	0	0	2	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	t0003	424	1	1	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	t0004	424	1	0	1	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	t0005	424	1	0	1	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B21_chr11_58501807_58513105	1/1	t0001	370	196	64	34	73	7	16	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	t0002	370	174	21	32	102	5	14	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	t0003	370	3	0	0	3	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	t0004	370	1	1	0	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B2_chr11_58416238_58433121	1/0	t0001	1281	256	52	44	123	11	25	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/1	t0002	1281	83	12	19	42	2	7	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0003	1281	21	16	0	4	1	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0004	1281	8	8	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0005	1281	4	0	0	4	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0006	1281	3	3	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0007	1281	2	0	0	2	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0008	1281	2	1	1	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0009	1281	1	0	1	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0010	1281	1	0	0	1	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	t0011	1281	1	0	1	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B3_chr11_58397464_58411874	1/1	t0001	101	385	97	64	168	18	36	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	t0002	101	1	1	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5D3P_chr11_55718776_55734621	0/0	t0001	2717	111	20	14	58	5	14	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0002	2717	88	2	18	54	5	9	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0003	2716	82	13	20	38	1	10	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	1/1	t0004	2714	60	25	5	23	1	4	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0005	2717	31	9	4	12	3	3	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0006	2717	17	1	3	12	0	1	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0007	2717	11	0	0	11	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0008	2716	8	7	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0009	2714	8	0	5	0	1	2	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0010	2717	6	6	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0011	2716	6	6	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0012	2716	4	1	1	0	2	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0013	2716	3	3	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0014	2717	2	2	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621