JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5D3P_chr11_55718776_55734621	0/0	t0015	2717	2	1	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0016	2717	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0017	2714	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0018	2716	1	1	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0019	2717	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0020	2716	1	0	0	0	0	1	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0021	2717	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0022	2717	1	1	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0023	2717	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	t0024	2717	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5H14_chr3_98142479_98161614	1/1	t0001	6391	116	11	20	68	3	12	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0002	6390	89	0	15	65	0	9	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0003	6390	39	6	3	26	0	4	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0004	6390	34	15	11	0	2	6	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0005	6390	11	11	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0006	6390	9	7	2	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0007	6390	9	0	0	2	3	4	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0008	6390	8	0	3	0	2	3	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0009	6390	6	0	0	6	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0010	6391	6	0	1	0	3	2	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0011	6390	5	5	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0012	6390	5	5	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0013	6391	5	0	3	0	0	2	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0014	6390	5	5	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0015	6390	4	3	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0016	6390	4	0	0	4	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0017	6391	3	3	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0018	6391	2	1	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0019	6390	2	0	0	2	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0020	6390	2	2	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0021	6390	2	0	0	2	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0022	6390	2	0	0	0	2	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0023	6391	2	0	0	2	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0024	6391	2	0	0	2	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0025	6391	2	2	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0026	6391	2	0	1	0	1	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0027	6391	2	0	2	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0028	6386	2	2	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0029	6386	2	1	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0030	6389	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0031	6389	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0032	6389	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0033	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0034	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0035	6390	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0036	6390	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0037	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0038	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0039	6364	1	0	0	0	0	1	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0040	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614