JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5H14_chr3_98142479_98161614	0/0	t0041	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0042	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0043	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0044	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0045	6390	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0046	6390	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0047	6390	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0048	6390	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0049	6390	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0050	6390	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0051	6390	1	0	0	0	0	1	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0052	6390	1	0	0	0	0	1	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0053	6390	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0054	6391	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0055	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0056	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0057	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0058	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0059	6391	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0060	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0061	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0062	6391	1	0	0	0	0	1	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0063	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0064	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0065	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0066	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0067	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0068	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0069	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0070	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0071	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0072	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0073	6391	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0074	6391	1	0	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0075	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0076	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	t0077	6390	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H15_chr3_98161696_98174774	1/1	t0001	288	419	74	76	209	16	42	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	t0002	288	13	13	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	t0003	288	7	7	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	t0004	288	2	2	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	t0005	288	2	2	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	t0006	288	1	0	0	1	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H1_chr3_98125721_98143548	0/0	t0001	5058	124	2	31	71	7	13	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	1/0	t0002	5058	67	1	13	39	4	9	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/1	t0003	5058	56	8	14	25	3	5	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0004	5057	46	6	4	30	0	6	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0005	5057	28	20	4	1	2	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0006	5059	7	7	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0007	5057	7	7	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548