JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5H1_chr3_98125721_98143548	0/0	t0008	5058	6	6	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0009	5058	5	4	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0010	5058	5	0	0	5	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0011	5058	5	0	0	5	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0012	5058	4	3	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0013	5057	4	4	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0014	5058	3	2	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0015	5058	3	0	0	3	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0016	5057	3	3	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0017	5058	2	2	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0018	5058	2	0	0	2	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0019	5058	2	1	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0020	5058	2	2	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0021	5058	2	0	1	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0022	5058	2	0	0	0	0	2	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0023	5058	2	0	0	2	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0024	5058	2	0	0	2	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0025	5057	2	0	0	0	0	2	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0026	5057	2	2	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0027	5062	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0028	5062	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0029	5062	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0030	5062	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0031	5062	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0032	5058	1	0	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0033	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0034	5058	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0035	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0036	5058	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0037	5058	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0038	5058	1	0	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0039	5058	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0040	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0041	5058	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0042	5058	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0043	5058	1	0	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0044	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0045	5058	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0046	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0047	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0048	5058	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0049	5057	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0050	5058	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	t0051	5057	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H2_chr3_98277505_98289070	0/0	t0001	637	190	47	21	112	3	7	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	1/0	t0002	637	165	31	40	54	14	25	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/1	t0003	637	45	1	12	26	1	4	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	t0004	637	28	11	5	8	0	4	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	t0005	637	8	8	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	t0006	637	2	0	0	2	0	0	copy fasta	OR5H2	chr3	98277505	98289070