JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5H2_chr3_98277505_98289070	0/0	t0007	637	2	0	0	2	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H6_chr3_98259244_98270356	1/1	t0001	184	238	57	56	82	15	26	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	t0002	184	190	30	22	124	3	11	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	t0003	184	11	9	2	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	t0004	184	2	2	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	t0005	184	1	0	0	0	0	1	copy fasta	OR5H6	chr3	98259244	98270356
OR5K1_chr3_98458201_98477924	1/1	t0001	2540	157	20	36	72	7	20	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0002	2542	133	20	28	64	7	14	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0003	2542	52	17	4	29	0	2	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0004	2541	42	1	2	29	1	9	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0005	2540	16	13	3	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0006	2542	11	11	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0007	2542	5	5	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0008	2542	2	2	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0009	2542	2	2	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0010	2540	2	0	2	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0011	2542	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0012	2541	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0013	2541	1	0	0	0	0	1	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0014	2542	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0015	2540	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0016	2542	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0017	2542	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0018	2542	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0019	2542	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0020	2542	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0021	2540	1	0	1	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0022	2540	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0023	2540	1	0	1	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0024	2540	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0025	2542	1	0	1	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	t0026	2542	1	0	0	0	1	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5L1_chr11_55806367_55817476	1/1	t0001	175	424	78	64	218	18	44	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	t0002	175	4	0	0	4	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	t0003	175	4	4	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	t0004	175	3	0	2	0	0	1	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	t0005	174	3	3	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	t0006	175	1	1	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	t0007	175	1	0	0	0	0	1	copy fasta	OR5L1	chr11	55806367	55817476
OR5M1_chr11_56604236_56619874	0/0	t0001	3355	152	25	34	73	2	18	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0002	3345	64	2	8	43	3	8	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/1	t0003	3354	49	16	3	23	0	6	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0004	3355	26	1	3	14	2	6	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0005	3355	14	12	2	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0006	3355	12	1	8	0	2	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0007	3355	10	0	0	10	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0008	3355	10	3	2	0	4	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0009	3355	7	7	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0010	3355	5	3	2	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0011	3354	4	4	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874