Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB15_chr7_123596821_123644481	0/0	t0019	2839	2	0	0	2	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0020	2850	2	2	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0021	2839	2	2	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0022	2838	2	2	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0023	2859	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0024	2858	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0025	2857	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0026	2838	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0027	2867	1	0	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0028	2841	1	0	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0029	2839	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0030	2860	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0031	2861	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0032	2871	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0033	2868	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0034	2864	1	0	0	0	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0035	2863	1	0	0	0	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0036	2859	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0037	2857	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0038	2855	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0039	2854	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0040	2851	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0041	2839	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0042	2838	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0043	2838	1	0	0	0	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0044	2838	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0045	2838	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0046	2838	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0047	2838	1	0	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0048	2840	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0049	2838	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0050	2840	1	0	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	t0051	2839	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB16_chr17_44165704_44184084	1/1	t0001	781	204	40	35	86	11	30	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0002	781	125	22	21	73	3	6	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0003	781	19	18	1	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0004	781	5	5	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0005	776	3	3	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0006	781	3	3	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0007	781	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0008	781	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	t0009	781	1	0	1	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB17_chr1_75913873_75937404	1/1	t0001	193	406	98	78	168	16	44	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	t0002	193	4	0	2	0	0	2	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	t0003	193	2	0	0	2	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB18_chr2_236188459_236269406	1/1	t0001	1475	160	19	34	71	11	23	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0002	1483	16	15	0	0	1	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0003	1483	12	10	2	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0004	1474	11	2	4	0	2	3	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0005	1487	9	9	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406