JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5M1_chr11_56604236_56619874	0/0	t0012	3355	4	4	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	1/0	t0013	3355	3	2	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0014	3355	3	3	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0015	3355	2	2	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0016	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0017	3355	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0018	3355	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0019	3355	1	0	0	0	0	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0020	3355	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0021	3345	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0022	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0023	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0024	3355	1	0	0	0	0	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0025	3355	1	0	0	0	0	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0026	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0027	3355	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0028	3355	1	0	0	0	0	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0029	3355	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0030	3355	1	0	0	0	1	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0031	3355	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0032	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0033	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0034	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0035	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	t0036	3355	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M3_chr11_56464274_56478352	1/1	t0001	477	426	79	72	218	11	44	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	t0002	477	11	11	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	t0003	477	5	5	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	t0004	477	5	1	2	0	2	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	t0005	477	2	0	2	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	t0006	477	2	0	0	2	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	t0007	477	1	0	0	0	1	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5P3_chr11_7819818_7835840	0/0	t0001	258	157	8	35	77	10	27	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0002	258	143	41	10	87	0	5	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0003	258	83	22	18	27	4	12	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0004	258	19	11	5	1	0	2	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0005	237	12	12	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0006	258	6	0	0	6	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0007	258	1	1	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	t0008	258	1	1	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5T1_chr11_56269154_56281819	0/1	t0001	491	327	79	48	161	10	28	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	t0002	491	34	1	12	13	2	6	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	t0003	491	9	8	1	0	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	t0004	491	8	4	2	0	2	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	t0005	491	1	0	1	0	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T2_chr11_56226282_56239255	0/0	t0001	1106	269	69	49	111	13	27	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0002	1106	103	3	22	64	3	11	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/1	t0003	1106	41	8	4	23	0	5	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0004	1106	5	5	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0005	1106	5	1	2	0	2	0	copy fasta	OR5T2	chr11	56226282	56239255