JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR5T2_chr11_56226282_56239255	0/0	t0006	1106	4	0	0	4	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0007	1106	4	4	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0008	1106	4	3	1	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0009	1106	3	3	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0010	1106	2	0	0	0	0	2	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0011	1106	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0012	1106	1	0	0	0	0	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0013	1106	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0014	1106	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0015	1106	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0016	1106	1	1	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	t0017	1106	1	1	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5V1_chr6_29348749_29373865	0/1	t0001	1798	295	67	52	127	12	36	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0002	1798	44	8	3	29	0	4	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0003	1798	37	2	9	21	2	3	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0004	1798	28	18	9	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0005	1798	18	0	1	17	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0006	1798	1	0	0	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0007	1798	1	0	0	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0008	1798	1	0	0	0	0	1	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0009	1798	1	1	0	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	t0010	1798	1	0	0	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR6A2_chr11_6786736_6804689	0/0	t0001	3312	166	13	22	103	9	19	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0002	3312	96	37	16	35	1	7	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/1	t0003	3312	73	6	25	31	3	7	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0004	3312	61	4	6	43	1	7	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0005	3312	10	0	10	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0006	3312	8	8	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0007	3312	5	5	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0008	3312	5	5	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0009	3312	4	0	0	4	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	1/0	t0010	3312	2	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0011	3312	2	2	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0012	3312	2	0	0	0	0	2	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0013	3312	2	0	0	2	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0014	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0015	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0016	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0017	3312	1	0	0	0	0	1	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0018	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0019	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0020	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0021	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0022	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0023	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0024	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0025	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0026	3310	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0027	3310	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0028	3312	1	0	0	0	0	1	copy fasta	OR6A2	chr11	6786736	6804689