JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6A2_chr11_6786736_6804689	0/0	t0029	3312	1	0	1	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0030	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0031	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0032	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0033	3310	1	0	1	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0034	3312	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0035	3325	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0036	3312	1	0	1	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	t0037	3312	1	0	0	1	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6B1_chr7_143995320_144013793	0/0	t0001	4218	106	0	14	64	6	22	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/1	t0002	4222	90	8	9	61	5	6	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0003	4222	72	5	18	48	0	1	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0004	4218	51	22	14	4	1	10	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0005	4218	11	11	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0006	4218	10	8	2	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0007	4222	9	9	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0008	4224	9	0	9	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0009	4218	6	0	3	0	1	2	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0010	4224	6	0	0	3	0	3	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0011	4224	5	0	0	5	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0012	4218	4	0	2	0	2	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0013	4218	4	3	1	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0014	4218	3	0	2	0	1	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0015	4220	3	3	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0016	4220	3	3	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0017	4220	2	0	2	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	1/0	t0018	4218	2	0	1	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0019	4218	2	0	0	2	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0020	4218	2	0	0	2	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0021	4222	2	2	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0022	4218	1	1	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0023	4218	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0024	4220	1	0	1	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0025	4218	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0026	4218	1	1	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0027	4218	1	1	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0028	4224	1	1	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0029	4222	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0030	4222	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0031	4220	1	1	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0032	4222	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0033	4218	1	0	0	0	0	1	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0034	4224	1	0	0	0	0	1	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	t0035	4218	1	1	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B3_chr2_240039571_240058521	0/0	t0001	703	195	31	20	123	7	14	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	1/1	t0002	703	131	14	35	58	6	16	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0003	703	74	30	10	19	4	11	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0004	703	19	4	9	0	0	6	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0005	703	5	1	2	0	1	1	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0006	703	5	5	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521