JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6B3_chr2_240039571_240058521	0/0	t0007	703	3	3	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0008	703	3	3	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0009	703	3	3	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0010	703	2	0	0	2	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0011	703	2	0	0	2	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0012	703	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	t0013	703	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6C1_chr12_55309343_55327364	0/0	t0001	1117	337	57	55	187	12	26	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	1/1	t0002	1117	64	4	14	30	2	12	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	t0003	1117	39	25	6	0	4	4	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	t0004	1117	25	7	4	12	0	2	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	t0005	1117	4	4	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	t0006	1117	3	3	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	t0007	1117	1	0	1	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	t0008	1117	1	0	0	1	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C2_chr12_55439076_55458347	1/1	t0001	1167	263	52	53	114	9	33	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0002	1167	174	35	27	90	7	15	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0003	1167	7	7	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0004	1167	4	4	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0005	1167	2	0	0	2	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0006	1167	1	1	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0007	1167	1	0	1	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0008	1167	1	1	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	t0009	1167	1	0	1	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C3_chr12_55325746_55337636	1/1	t0001	107	449	97	82	208	16	44	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	t0002	107	1	1	0	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C4_chr12_55544602_55560832	1/1	t0001	4212	256	36	57	118	8	35	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0002	4212	28	0	1	27	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0003	4211	18	0	0	18	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0004	4212	14	0	1	13	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0005	4212	13	1	6	1	4	1	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0006	4212	10	10	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0007	4211	10	8	2	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0008	4211	10	10	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0009	4212	7	0	5	0	1	1	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0010	4211	6	2	0	0	1	3	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0011	4212	4	4	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0012	4212	3	0	1	2	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0013	4212	3	3	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0014	4211	3	3	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0015	4211	3	3	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0016	4211	3	3	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0017	4211	3	2	1	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0018	4212	2	0	0	0	0	2	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0019	4212	2	2	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0020	4212	2	0	0	2	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0021	4212	2	2	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0022	4211	2	2	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0023	4212	1	0	1	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0024	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832