JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6C4_chr12_55544602_55560832	0/0	t0025	4212	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0026	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0027	4212	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0028	4212	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0029	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0030	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0031	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0032	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0033	4212	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0034	4211	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0035	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0036	4212	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0037	4212	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0038	4212	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0039	4212	1	0	1	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	t0040	4211	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C6_chr12_55288988_55301569	1/1	t0001	577	460	83	80	234	18	43	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	t0002	577	14	13	1	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	t0003	577	3	0	3	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	t0004	577	2	2	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	t0005	577	1	0	0	1	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	t0006	577	1	0	0	0	0	1	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	t0007	577	1	0	0	1	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C74_chr12_55239609_55261625	0/0	t0001	8618	56	8	8	33	1	6	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	1/0	t0002	8618	54	2	14	24	1	12	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0003	8617	52	1	11	27	6	7	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/1	t0004	8621	30	3	13	4	3	6	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0005	8622	18	16	2	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0006	8627	16	0	0	15	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0007	8618	16	16	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0008	8618	9	9	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0009	8627	6	1	4	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0010	8618	6	0	0	6	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0011	8618	5	2	1	2	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0012	8626	4	1	1	1	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0013	8624	4	4	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0014	8623	4	0	0	4	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0015	8619	4	3	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0016	8618	3	2	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0017	8617	2	0	1	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0018	8617	2	2	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0019	8618	2	0	0	2	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0020	8619	2	2	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0021	8627	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0022	8626	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0023	8626	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0024	8627	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0025	8627	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0026	8626	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0027	8626	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625