JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6C74_chr12_55239609_55261625	0/0	t0028	8627	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0029	8615	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0030	8622	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0031	8624	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0032	8625	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0033	8623	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0034	8619	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0035	8617	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0036	8618	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0037	8618	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0038	8618	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0039	8617	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0040	8617	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0041	8617	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0042	8617	1	0	0	0	1	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0043	8617	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0044	8617	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0045	8618	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0046	8618	1	0	0	0	1	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0047	8618	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0048	8618	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0049	8618	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0050	8617	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0051	8618	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0052	8618	1	0	0	0	1	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0053	8618	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0054	8619	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0055	8618	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0056	8618	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0057	8619	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0058	8619	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0059	8620	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0060	8618	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0061	8618	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0062	8617	1	0	0	1	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0063	8618	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0064	8618	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	t0065	8617	1	0	1	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C75_chr12_55357975_55374279	0/1	t0001	3635	174	11	42	85	9	26	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0002	3635	132	7	16	96	5	8	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	1/0	t0003	3631	57	25	6	15	4	6	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0004	3635	15	14	1	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0005	3635	12	7	3	0	0	2	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0006	3635	10	10	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0007	3635	7	2	3	0	0	2	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0008	3635	7	0	1	6	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0009	3635	4	4	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0010	3631	4	4	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0011	3635	3	0	0	3	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0012	3635	3	0	0	3	0	0	copy fasta	OR6C75	chr12	55357975	55374279