JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6C75_chr12_55357975_55374279	0/0	t0013	3631	3	3	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0014	3635	2	0	0	2	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0015	3635	2	1	1	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0016	3635	2	2	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0017	3635	2	2	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0018	3635	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0019	3635	1	0	1	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0020	3635	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0021	3635	1	0	1	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0022	3635	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0023	3631	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0024	3631	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0025	3635	1	0	1	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0026	3635	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0027	3635	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0028	3635	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0029	3631	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0030	3635	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0031	3635	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	t0032	3631	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6F1_chr1_247706436_247721646	1/1	t0001	836	259	53	54	108	14	28	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	t0002	836	107	25	10	62	0	10	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	t0003	836	5	5	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	t0004	836	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	t0005	836	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	t0006	836	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6J1_chr14_22625929_22649352	0/1	t0001	3122	126	2	29	70	5	19	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	1/0	t0002	3122	84	4	24	38	5	12	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0003	3129	22	2	6	10	0	4	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0004	3122	9	9	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0005	3129	9	9	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0006	3122	8	0	1	5	0	2	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0007	3122	6	5	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0008	3123	6	6	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0009	3129	5	5	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0010	3130	5	5	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0011	3129	4	0	0	1	1	2	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0012	3122	4	4	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0013	3122	4	4	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0014	3122	4	4	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0015	3129	3	3	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0016	3129	3	0	2	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0017	3122	3	0	0	1	2	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0018	3122	3	0	0	3	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0019	3129	3	3	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0020	3122	3	3	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0021	3122	2	2	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0022	3122	2	0	1	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0023	3129	2	0	1	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0024	3129	2	2	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352