JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6J1_chr14_22625929_22649352	0/0	t0025	3122	2	2	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0026	3122	2	2	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0027	3122	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0028	3129	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0029	3122	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0030	3122	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0031	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0032	3122	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0033	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0034	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0035	3122	1	0	0	0	0	1	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0036	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0037	3103	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0038	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0039	3122	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0040	3122	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0041	3122	1	0	0	0	0	1	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0042	3110	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0043	3122	1	0	0	0	0	1	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0044	3171	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0045	3122	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0046	3154	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0047	3122	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0048	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0049	3122	1	0	0	0	0	1	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0050	3122	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0051	3122	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0052	3122	1	0	0	0	0	1	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0053	3129	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0054	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0055	3122	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0056	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0057	3129	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0058	3122	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0059	3129	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0060	3122	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0061	3123	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	t0062	3123	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6K3_chr1_158711327_158725720	1/1	t0001	897	180	26	36	85	3	28	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0002	897	138	19	30	79	5	5	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0003	897	78	13	9	35	8	13	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0004	897	15	15	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0005	897	10	9	1	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0006	897	4	4	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0007	897	3	0	0	3	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0008	897	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0009	897	2	0	2	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0010	897	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0011	897	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0012	897	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720