JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6K3_chr1_158711327_158725720	0/0	t0013	897	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0014	958	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0015	897	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	t0016	897	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K6_chr1_158749720_158760891	1/1	t0001	213	382	85	60	189	14	32	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	t0002	213	81	13	22	30	2	14	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	t0003	213	4	0	0	4	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	t0004	213	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6N1_chr1_158759236_158777195	0/0	t0001	1702	135	2	21	95	5	12	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	1/0	t0002	1702	83	9	15	39	3	16	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0003	1702	76	6	14	50	2	4	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/1	t0004	1702	67	15	16	30	3	2	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0005	1702	41	22	9	1	1	8	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0006	1702	20	0	0	20	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0007	1702	16	14	2	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0008	1702	11	10	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0009	1702	6	6	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0010	1702	3	3	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0011	1702	3	3	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0012	1702	2	2	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0013	1702	2	2	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0014	1702	1	0	1	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0015	1702	1	0	1	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0016	1702	1	1	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0017	1702	1	0	0	1	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0018	1702	1	1	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0019	1702	1	0	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	t0020	1702	1	0	1	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N2_chr1_158769222_158786204	1/0	t0001	2502	141	19	35	70	6	10	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0002	2501	74	11	6	44	0	13	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0003	2498	43	3	11	26	0	3	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0004	2501	37	0	5	27	1	4	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0005	2502	33	1	0	30	0	2	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/1	t0006	2502	29	5	16	0	5	2	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0007	2501	26	16	5	1	0	4	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0008	2502	11	0	6	4	1	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0009	2501	6	6	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0010	2502	5	5	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0011	2503	5	5	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0012	2501	5	0	1	4	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0013	2502	4	4	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0014	2502	4	4	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0015	2502	4	4	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0016	2502	3	2	1	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0017	2502	2	0	0	2	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0018	2502	2	2	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0019	2501	2	0	0	2	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0020	2501	2	2	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0021	2498	2	2	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0022	2501	2	0	1	0	0	1	copy fasta	OR6N2	chr1	158769222	158786204