JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6N2_chr1_158769222_158786204	0/0	t0023	2498	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0024	2502	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0025	2502	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0026	2503	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0027	2502	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0028	2502	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0029	2502	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0030	2498	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0031	2498	1	0	1	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0032	2502	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0033	2501	1	0	0	0	0	1	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0034	2501	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0035	2501	1	0	0	0	0	1	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0036	2502	1	0	0	0	1	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0037	2501	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	t0038	2502	1	0	0	0	0	1	copy fasta	OR6N2	chr1	158769222	158786204
OR6P1_chr1_158555606_158575580	1/1	t0001	2302	175	32	36	79	7	19	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0002	2302	96	28	12	43	2	11	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0003	2302	87	9	11	55	4	8	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0004	2302	25	0	8	17	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0005	2302	11	6	4	0	1	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0006	2302	5	5	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0007	2302	4	4	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0008	2302	4	4	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0009	2302	3	1	0	0	2	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0010	2302	3	3	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0011	2302	2	2	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0012	2302	1	1	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0013	2302	1	0	1	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0014	2302	1	0	1	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0015	2302	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0016	2302	1	1	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0017	2302	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0018	2302	1	0	1	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0019	2302	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0020	2302	1	1	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0021	2302	1	1	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	t0022	2302	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6Y1_chr1_158539550_158559405	1/1	t0001	4151	99	22	21	44	1	9	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0002	4153	84	5	17	50	4	8	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0003	4153	64	7	5	43	2	7	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0004	4151	53	4	13	26	2	8	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0005	4153	11	11	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0006	4153	11	0	7	0	1	3	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0007	4153	9	8	0	0	0	1	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0008	4152	8	0	1	7	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0009	4151	7	0	2	0	4	1	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0010	4151	7	2	4	0	1	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0011	4153	6	0	0	6	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0012	4152	6	0	3	3	0	0	copy fasta	OR6Y1	chr1	158539550	158559405