Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB18_chr2_236188459_236269406	0/0	t0006	1471	7	5	1	0	1	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0007	1483	7	7	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0008	1475	6	6	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0009	1479	5	4	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0010	1475	3	0	3	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0011	1475	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0012	1475	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0013	1475	1	0	0	1	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0014	1483	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0015	1475	1	0	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0016	1475	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0017	1475	1	0	0	0	1	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0018	1491	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0019	1475	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0020	1475	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0021	1475	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	t0022	1475	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB1_chr2_238421927_238457250	1/0	t0001	5884	101	14	9	63	4	10	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0002	5847	82	0	19	53	1	9	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0003	5884	55	29	8	15	1	2	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0004	5847	36	5	14	5	5	7	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0005	5882	34	10	1	20	1	2	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0006	5884	16	3	1	12	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0007	5952	12	0	3	8	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0008	5850	8	5	1	0	0	2	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0009	5850	7	6	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0010	5882	7	0	0	7	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0011	5847	5	0	0	5	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0012	5884	3	0	0	3	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0013	5884	2	0	1	0	1	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0014	5884	2	0	0	2	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0015	5850	2	2	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/1	t0016	5847	2	0	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0017	5847	2	0	0	2	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0018	5847	2	0	2	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0019	5847	2	2	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0020	5847	2	0	0	0	0	2	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0021	5850	2	2	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0022	5882	2	0	0	2	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0023	5884	1	0	0	0	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0024	5884	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0025	5884	1	0	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0026	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0027	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0028	5884	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0029	5884	1	0	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0030	5952	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0031	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0032	5884	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0033	5884	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250