JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR6Y1_chr1_158539550_158559405	0/0	t0013	4151	5	0	0	5	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0014	4148	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0015	4153	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0016	2565	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0017	4147	4	4	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0018	4147	4	4	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0019	4151	3	3	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0020	4151	3	3	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0021	4153	3	0	0	3	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0022	4151	2	0	0	0	0	2	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0023	4151	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0024	4151	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0025	4152	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0026	4151	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0027	4151	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0028	4151	1	0	0	0	0	1	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0029	4151	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0030	4152	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0031	4156	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0032	4156	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0033	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0034	4153	1	0	1	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0035	4158	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0036	4153	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0037	4153	1	0	0	0	1	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0038	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0039	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0040	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0041	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0042	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0043	4147	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0044	4146	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0045	4152	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0046	4153	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0047	4151	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	t0048	2565	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR7A10_chr19_14835466_14853922	0/0	t0001	918	169	15	30	109	4	11	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/1	t0002	918	103	16	20	62	0	4	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0003	918	79	2	12	53	2	10	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	1/0	t0004	918	68	38	12	0	5	12	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0005	918	24	0	2	16	1	5	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0006	918	13	13	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0007	918	8	0	3	0	2	3	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0008	918	6	6	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0009	918	4	4	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0010	918	2	0	0	0	0	2	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0011	918	1	0	1	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0012	918	1	0	0	0	0	1	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0013	918	1	0	1	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0014	918	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922