JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR7A10_chr19_14835466_14853922	0/0	t0015	918	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0016	918	1	1	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0017	918	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0018	918	1	0	0	0	0	1	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0019	898	1	0	1	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0020	918	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0021	918	1	0	0	0	0	1	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	t0022	918	1	1	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A17_chr19_14873203_14891132	0/0	t0001	2700	83	0	10	61	3	9	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/1	t0002	2709	42	0	7	34	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0003	2714	30	2	5	22	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0004	2699	22	0	8	14	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	1/0	t0005	2710	21	1	10	0	4	5	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0006	2698	15	0	4	2	3	6	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0007	2705	14	0	8	4	0	2	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0008	2712	12	6	2	3	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0009	2714	11	0	4	6	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0010	2714	11	8	1	0	0	2	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0011	2702	10	4	0	5	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0012	2714	7	7	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0013	2715	7	2	2	3	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0014	2698	5	0	0	5	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0015	2701	5	0	0	5	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0016	2716	5	2	1	1	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0017	2711	5	1	1	0	2	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0018	2693	4	4	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0019	2700	4	0	0	4	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0020	2698	4	4	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0021	2718	4	4	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0022	2709	4	1	2	1	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0023	2710	4	0	0	3	1	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0024	2694	3	3	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0025	2698	3	0	3	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0026	2693	3	0	0	3	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0027	2706	3	3	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0028	2714	3	3	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0029	2702	3	3	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0030	2702	2	0	0	2	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0031	2700	2	0	1	0	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0032	2713	2	0	0	2	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0033	2718	2	0	0	2	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0034	2713	2	0	0	2	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0035	2709	2	2	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0036	2714	2	0	0	2	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0037	2714	2	2	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0038	2714	2	2	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0039	2717	2	0	0	0	0	2	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0040	2716	2	0	0	1	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0041	2703	2	2	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0042	2703	2	2	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132