JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR7A17_chr19_14873203_14891132	0/0	t0093	2710	1	0	0	1	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0094	2710	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0095	2712	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0096	2710	1	0	1	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0097	2710	1	0	0	0	1	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0098	2713	1	0	0	1	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0099	2711	1	0	0	1	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0100	2712	1	0	0	0	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0101	2706	1	0	1	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0102	2710	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0103	2697	1	0	0	0	0	1	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0104	2702	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0105	2700	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0106	2687	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	t0107	2710	1	0	0	0	1	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A5_chr19_14821241_14840185	1/0	t0001	1167	405	65	77	204	14	44	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0002	1167	23	14	0	5	0	4	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0003	1167	11	11	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0004	1167	7	7	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/1	t0005	1167	6	0	3	0	2	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0006	1167	4	0	0	4	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0007	1164	4	0	0	3	0	1	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0008	1167	3	0	1	2	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0009	1167	1	0	0	1	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0010	1167	1	1	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0011	1167	1	0	0	1	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0012	1167	1	0	0	1	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0013	1167	1	1	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0014	1167	1	0	0	0	0	1	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0015	1167	1	1	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0016	1167	1	0	1	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	t0017	1164	1	0	0	1	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7C1_chr19_14793515_14840185	1/0	t0001	1394	321	48	64	158	13	37	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0002	1394	11	0	6	5	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0003	1394	11	6	0	5	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0004	1394	10	9	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0005	1394	8	7	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0006	1394	7	7	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0007	1394	7	7	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/1	t0008	1394	6	0	3	0	2	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0009	1394	6	0	0	2	0	4	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0010	1206	4	4	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0011	1391	4	0	0	3	0	1	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0012	1394	3	3	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0013	1394	2	2	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0014	1394	2	0	0	2	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0015	1394	1	0	0	0	1	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0016	1394	1	0	0	0	0	1	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0017	1394	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0018	1394	1	0	0	0	0	1	copy fasta	OR7C1	chr19	14793515	14840185