JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR7C1_chr19_14793515_14840185	0/0	t0019	1394	1	0	0	1	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	t0020	1394	1	0	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7D2_chr19_9173979_9193818	1/1	t0001	2348	132	5	38	69	5	13	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0002	2348	55	4	8	38	2	3	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0003	2349	40	17	5	13	3	2	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0004	2347	18	0	11	4	0	3	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0005	2349	16	1	0	12	2	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0006	2350	14	0	2	4	0	8	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0007	2348	13	13	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0008	2347	10	8	1	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0009	2348	9	5	0	4	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0010	2346	6	0	2	0	1	3	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0011	2349	6	0	1	5	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0012	2347	6	6	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0013	2346	5	5	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0014	2349	5	5	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0015	2348	4	4	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0016	2349	3	0	1	2	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0017	2350	3	2	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0018	2347	2	0	1	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0019	2347	2	0	0	1	1	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0020	2349	2	1	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0021	2348	2	0	0	0	0	2	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0022	2348	2	0	0	2	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0023	2348	2	0	0	2	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0024	2349	2	0	0	2	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0025	2348	2	1	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0026	2348	2	2	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0027	2349	2	2	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0028	2349	2	2	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0029	2347	2	2	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0030	2348	1	0	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0031	2347	1	0	0	0	1	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0032	2347	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0033	2348	1	0	0	0	1	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0034	2348	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0035	2348	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0036	2347	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0037	2348	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0038	2349	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0039	30744	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0040	2348	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0041	2348	1	0	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0042	2348	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0043	2348	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0044	2348	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0045	2348	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0046	2348	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0047	2348	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0048	2349	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818