JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR7D2_chr19_9173979_9193818	0/0	t0049	2349	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0050	2348	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0051	2348	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0052	2349	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0053	2349	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0054	2346	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0055	2347	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0056	2348	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0057	2348	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	t0058	2348	1	0	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D4_chr19_9205276_9224589	1/1	t0001	4027	168	6	38	99	8	15	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0002	4039	28	14	5	0	3	6	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0003	4032	26	6	2	16	0	2	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0004	4106	18	1	2	15	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0005	4027	17	0	4	13	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0006	4039	16	1	2	6	0	7	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0007	4026	10	0	6	0	4	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0008	4028	9	0	1	6	1	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0009	4027	9	7	2	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0010	4028	8	8	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0011	4026	8	0	1	6	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0012	4022	6	6	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0013	4027	6	0	0	6	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0014	4027	6	0	0	6	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0015	4040	5	5	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0016	4039	5	5	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0017	4031	4	4	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0018	4027	3	0	2	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0019	4027	3	3	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0020	4038	3	3	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0021	4027	3	0	3	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0022	4027	3	0	0	3	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0023	4026	2	2	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0024	4026	2	0	0	1	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0025	4028	2	0	0	2	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0026	4027	2	2	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0027	4107	2	0	0	2	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0028	4032	2	0	0	0	0	2	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0029	4030	2	2	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0030	4027	2	0	0	2	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0031	4028	2	0	0	2	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0032	4029	2	1	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0033	4028	2	0	0	2	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0034	4040	2	0	1	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0035	4026	2	0	0	0	0	2	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0036	4032	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0037	4024	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0038	4028	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0039	4039	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0040	4032	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589