JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR7D4_chr19_9205276_9224589	0/0	t0041	4022	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0042	4024	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0043	4025	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0044	4028	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0045	4027	1	0	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0046	4043	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0047	4039	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0048	4026	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0049	4037	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0050	4027	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0051	4031	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0052	4105	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0053	4027	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0054	4036	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0055	4031	1	0	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0056	4032	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0057	4034	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0058	4033	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0059	4024	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0060	4028	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0061	4026	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0062	4027	1	0	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0063	4037	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0064	4039	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0065	4027	1	0	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0066	4028	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0067	4026	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0068	4026	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0069	4027	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0070	4014	1	0	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0071	4041	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0072	4026	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0073	4027	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0074	4027	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0075	4028	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0076	4027	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	t0077	4031	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7E24_chr19_9245930_9257625	1/1	t0001	677	234	33	54	108	10	27	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0002	677	159	36	25	89	4	5	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0003	677	61	23	4	16	3	15	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0004	677	14	0	0	13	1	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0005	677	5	5	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0006	677	1	1	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0007	677	1	0	0	0	0	1	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	t0008	677	1	0	1	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7G2_chr19_9095407_9112475	0/0	t0001	2041	161	42	32	70	8	9	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0002	2041	139	6	20	96	5	12	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0003	2041	46	28	10	1	1	6	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0004	2041	27	0	2	11	1	13	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0005	2041	20	3	9	3	1	4	copy fasta	OR7G2	chr19	9095407	9112475