JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR7G2_chr19_9095407_9112475	0/0	t0006	2041	10	10	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0007	2041	7	0	0	7	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0008	2041	4	4	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0009	2041	4	0	4	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0010	2041	3	0	0	3	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0011	2041	2	0	0	0	0	2	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0012	2041	2	0	0	2	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0013	2041	2	0	2	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0014	2041	2	2	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0015	2041	2	0	1	0	0	1	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0016	1879	1	0	1	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0017	2041	1	0	1	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0018	2041	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0019	2041	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0020	2041	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0021	2041	1	0	0	1	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0022	2041	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0023	2041	1	0	0	0	0	1	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0024	2003	1	0	0	1	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0025	2041	1	0	0	1	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	t0026	2041	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR8A1_chr11_124564997_124576374	1/1	t0001	449	413	66	63	216	18	48	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0002	449	16	15	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0003	439	10	9	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0004	449	5	5	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0005	427	4	0	0	4	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0006	449	1	0	0	1	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0007	449	1	0	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0008	449	1	0	0	1	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	t0009	449	1	1	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8B2_chr11_124377394_124389499	1/1	t0001	152	416	98	72	188	14	42	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	t0002	152	28	0	2	26	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B3_chr11_124390534_124404024	0/1	t0001	1229	222	15	32	137	11	26	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0002	1229	133	45	20	46	2	20	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	1/0	t0003	1229	51	7	18	24	1	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0004	1229	22	6	4	11	0	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0005	1229	9	8	1	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0006	1229	6	5	1	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0007	1229	4	4	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0008	1229	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0009	1229	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0010	1229	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0011	1229	1	0	0	0	0	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	t0012	1229	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B8_chr11_124432445_124450696	0/0	t0001	2965	115	1	21	77	3	13	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	1/0	t0002	2979	50	9	10	23	2	5	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/1	t0003	2977	19	1	2	10	2	3	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0004	2969	17	9	2	5	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0005	2979	12	0	0	10	0	2	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0006	2975	11	10	1	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696