JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8B8_chr11_124432445_124450696	0/0	t0007	2979	10	0	3	5	0	2	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0008	2973	9	8	1	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0009	2983	9	0	2	6	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0010	2973	7	2	3	0	1	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0011	2975	6	1	0	3	1	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0012	2975	6	6	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0013	2977	6	1	1	4	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0014	2979	5	0	2	2	1	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0015	2969	5	5	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0016	2981	5	0	4	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0017	2961	5	5	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0018	2983	5	0	1	0	3	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0019	2978	4	0	2	0	1	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0020	2977	4	0	3	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0021	2959	4	4	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0022	2965	4	3	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0023	2981	4	0	2	0	0	2	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0024	2987	4	0	4	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0025	2975	3	3	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0026	2975	3	0	0	1	0	2	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0027	2978	3	0	1	1	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0028	2977	3	0	0	3	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0029	2983	3	3	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0030	2977	3	3	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0031	2979	3	3	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0032	2985	3	0	0	3	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0033	2983	3	0	0	3	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0034	2985	3	0	1	0	1	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0035	2967	3	0	2	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0036	2969	3	3	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0037	2977	3	0	0	2	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0038	2981	3	0	0	3	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0039	2983	3	0	1	0	0	2	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0040	2976	2	0	1	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0041	2965	2	1	1	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0042	2979	2	1	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0043	2977	2	2	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0044	2978	2	0	1	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0045	2975	2	2	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0046	2965	2	0	2	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0047	2965	2	0	0	2	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0048	2965	2	2	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0049	2964	2	0	0	2	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0050	2979	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0051	2974	1	0	0	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0052	2977	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0053	2967	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0054	2969	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0055	2975	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0056	2973	1	0	1	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696