JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8B8_chr11_124432445_124450696	0/0	t0057	2975	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0058	2979	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0059	2965	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0060	2981	1	0	0	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0061	2983	1	0	0	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0062	2979	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0063	2985	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0064	2973	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0065	2979	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0066	2977	1	0	1	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0067	2973	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0068	2979	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0069	2977	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0070	2981	1	0	0	0	1	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0071	2965	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0072	2966	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0073	2969	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0074	2965	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0075	2975	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0076	2965	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0077	2969	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0078	2975	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0079	2960	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	t0080	2968	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8D1_chr11_124297831_124318949	0/0	t0001	7350	95	1	18	58	8	10	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0002	7360	92	14	19	41	2	16	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0003	7360	75	9	9	42	3	12	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	1/0	t0004	7360	35	1	10	21	1	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0005	7360	17	14	3	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0006	7373	15	0	5	9	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0007	7360	7	7	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0008	7360	6	1	3	1	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0009	7357	6	6	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0010	7350	5	5	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0011	7360	4	3	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0012	7360	3	2	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0013	7359	3	0	0	3	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0014	7360	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0015	7360	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0016	7350	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0017	7360	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0018	7360	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0019	7360	3	0	3	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0020	7360	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0021	7360	2	0	0	2	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0022	7350	2	2	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0023	7360	2	2	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0024	7360	2	2	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0025	7360	2	0	0	2	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0026	7350	2	0	0	2	0	0	copy fasta	OR8D1	chr11	124297831	124318949