Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB1_chr2_238421927_238457250	0/0	t0034	5884	1	0	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0035	5884	1	0	0	0	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0036	5884	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0037	5884	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0038	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0039	5884	1	0	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0040	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0041	5847	1	0	0	0	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0042	5847	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0043	5847	1	0	1	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0044	5847	1	0	0	1	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0045	5847	1	0	0	0	1	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0046	5850	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0047	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0048	5884	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0049	5850	1	0	0	0	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0050	5882	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0051	5882	1	1	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	t0052	5882	1	0	0	0	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB2_chr14_93929166_93981570	0/1	t0001	701	221	64	47	73	14	22	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	t0002	700	137	23	13	82	2	17	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	t0003	700	8	4	1	3	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	t0004	701	5	5	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	t0005	701	1	0	1	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	t0006	700	1	0	0	0	0	1	copy fasta	ASB2	chr14	93929166	93981570
ASB3_chr2_53664980_53791953	1/0	t0001	670	151	43	27	55	7	18	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0002	670	74	10	5	50	2	7	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0003	669	42	10	9	19	2	2	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0004	671	27	13	5	7	0	2	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/1	t0005	663	14	1	7	0	2	3	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0006	671	9	1	1	6	0	1	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0007	669	8	1	1	5	0	1	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0008	668	8	5	1	2	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0009	669	5	0	1	4	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0010	670	4	4	0	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0011	670	3	0	1	0	1	1	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0012	670	2	0	0	2	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0013	671	1	1	0	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0014	670	1	0	0	0	0	1	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	t0015	670	1	1	0	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB4_chr7_95480943_95545233	0/1	t0001	2502	197	10	35	115	7	29	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0002	2502	47	14	8	19	0	6	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0003	2504	40	11	16	6	3	4	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0004	2502	31	15	5	6	1	4	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0005	2502	13	13	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0006	2502	11	10	1	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0007	2501	6	6	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	1/0	t0008	2504	6	0	3	0	1	1	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0009	2502	5	5	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0010	2502	5	0	5	0	0	0	copy fasta	ASB4	chr7	95480943	95545233