JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8D1_chr11_124297831_124318949	0/1	t0027	7350	2	0	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0028	7350	2	0	0	2	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0029	7350	2	0	0	0	2	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0030	7360	2	0	1	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0031	7360	2	2	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0032	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0033	7360	1	0	0	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0034	7360	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0035	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0036	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0037	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0038	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0039	7360	1	0	0	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0040	7360	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0041	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0042	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0043	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0044	7373	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0045	7361	1	0	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0046	7331	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0047	7350	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0048	7350	1	0	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0049	7350	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0050	7350	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0051	7350	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0052	7360	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	t0053	7360	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D4_chr11_123897167_123914229	0/1	t0001	1958	184	18	46	98	4	17	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0002	1957	89	24	9	40	4	12	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	1/0	t0003	1960	76	11	8	45	3	8	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0004	1959	28	4	5	13	2	4	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0005	1959	14	0	3	8	1	2	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0006	1957	11	9	1	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0007	1959	7	6	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0008	1958	5	0	0	5	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0009	1960	5	0	3	0	0	2	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0010	1960	4	3	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0011	1958	4	0	0	4	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0012	1958	4	3	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0013	1959	2	2	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0014	1958	2	0	1	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0015	1960	2	2	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0016	1959	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0017	1959	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0018	1960	1	0	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0019	1958	1	0	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0020	1958	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0021	1957	1	0	0	0	0	1	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0022	1957	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0023	1958	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229